For deck height, consider how tall the normal tall being for whatever race will be using the ship. Add 25% for overhead clearance. Add more clearance for deck thickness, structural members, piping and ventilation ductwork, control runs, power systems, gravity systems, and space to access maintenance points.
Residential structures have varied ceiling height over the years, depending on the resources available, lifestyle and climate. The norm now is 8 to 10 ft with 12in floor thickness. Commercial structures use 10 to 12 ft ceiling space with drop ceilings for utilities of about 3ft more.
Using angled ceiling space in areas where the compartment is against the hull makes sense in some cases, but not if a person is expected to stand or do maintenance in that area. Using angels hull space would be fine for mechanical areas that do not need any maintenance done, port holes and fuel tankage. Stacking bunks in compartments on vessels that allow crew off at every port. An average deck to ceiling height of 3M, 10 Ft would be appropriate for most purposes