The thing that I didn't get (and, as noted, almost nobody else did either) is that after LBB5 '80, maneuver drives are gravitic in nature rather than reaction drives. They don't need an exhaust! (Power plants do, though, but not as big as you'd see on a jump drive.) But everyone draws starships with big rocket or afterburner nozzles for the maneuver drives because that's what people expect...
To be
excessively fair and lenient in interpretation ... those huge nozzles like we're accustomed to seeing on the back of a Type-S Scout/Courier are probably multi-function.
When energized by the fusion power plant, those nozzles can act as
HEPlaR engines for maneuvering power beyond most gravity wells.
When not energized by the fusion power plant, those same nozzles are used to jettison/dump drive byproducts (helium waste from the fusion reactor, excess fuel flushed during jump cycle prep as coolant, waste heat, etc.). They probably use a MHD constrictor field energized by the power plant to create a "rocket throat" in the exhaust channel when needing to use the active
HEPlaR mode, giving them a "variable rocket geometry" to optimize for action/reaction thrust.
Thruster Plates would be integrated into other parts of the hull (in this case, the ventral and dorsal bulkheads of the outer hull) so as to facilitate and enable VTOL performance in a flat attitude on ventral landing struts, rather than needing the ship to be a tailsitter that lands with an upright orientation resting on the aft hull section and the
HEPlaR system pointing into the ground.
So the drives room at the aft of the ship contains the (combination) Jump plus (
HEPlaR backup) Maneuver plus (fusion) Power Plant drives as an "all in one" integrated arrangement, with the "main" gravitic
Thruster Plates of the Maneuver Drive integrated into the hull at strategic engineering points around the outside of the hull for agility control and reactionless maneuvering.
That's my take on the notion.
So the deck plans aren't "wrong" per se ... but they aren't showing you quite what you might think at first glance. So if there's an error, it's an error of interpretation, rather than an error of deck layout planning.