Jump frame built at A starports and modules constructed at type B should speed it up a bit.
Something like a real world container carrier but instead of containers you have 90t 'cutter modules'.
Agreed, although I favor some intrinsic fuel capability as well as 1G in the "jump frame" (as opposed to straight "Jumper" like the X-Boat). This been said, since those ships are replacement tonnage, they would probably respect the norm that offered then the best return on investment.
Another important issue you raise is the size of "containers". What most people described are LASH (Lighter Aboard SHip) module, although the container analogy works. Unlike the Lighter, the containers is readily intended to be multimodal (From ship straight onto truck/rail). The Lighter will carry 8-16 containers that will be handled individually later.
It then become a study in "lift" number and time /cost per "lift". Remember to consider intermediate transit lift. So you have to pick up aboard, move to storage, lift down to await cargo aggregation to ship out, lift up, move to Landers, lift aboard lander, do it again upon landing to storage area and break shipment for distribution through transit on rail/road. For bulk cargo things get a bit easier, the lighter is just treated like an overgrown rail car , put atop the chute, open belly doors, then move back to orbit storage were others are waiting.
The general purpose Jump frame would be ideally suited because you can design it to take brackets that fit owners' requirements given old trade. 400t
bulker "tip off" bin, 30t cutter module for "Frontier" route, a mixture of passengers accomodations and general containerized cargo, in subhull intended to be loaded on feeder liner in one lift while containing 10 ? 20 ? road containers?
The 90 ton module may be great. but without further explanation it seems to involve a lot of intermediate lifts given that it is likely to contain less load units for final distribution than a 200/400 tonners while being too large for final road/rail distribution and thus a intermediate container
My design are based on a cross frame with Eng & Crew & Bridge in center frame, intrinsic fuel in load bearing branches, along with inspection tunnels. M Tug bring (pick off) loads on a parallel above or below trajectory. No issue on the lenght of the pods, only making sure to oprimize the nesting transversally. You probably have more hook ups brackets than needed (In case some customer would use a large number of 200tonners rather than fewer 400tonners) Keep the bottom of the center frame clean for utility craft landing or tanker hook-ups.
Have fun
Selandia