I missed this. It has the updated errata document, but the individual products have not been modified to include the errata.
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I'm working on getting a full update for your question from Marc.
Here's the list of previously identified issues with the MT CD-ROM:
0211 MT Players' Manual.pdf: pp. 4, 27-28, 63-64 missing; some misordered pages.
0212 MT Referee's Manual.pdf: pp. 102, 104 need clean rescan; many misordered pages.
0213 MT Imperial Encyclopedia.pdf: p. 97 needs clean rescan; Spinward Marches data needs clean rescan.
0214 MT Rebellion Sourcebook.pdf: pp. 72-75, inside back cover need clean rescan.
0215 MT Referee's Companion.pdf: pp. 43, 86, 95 need clean rescan; p. 89-90 missing.
0216 MT COACC.pdf: no specific issue, no scanning problems.
0218 MT Fighting Ships of the Shattered Imperium.pdf: p. 25 upside down. 0219 MT Knightfall.pdf: p. 76 needs clean rescan; p. 75, 78 have line down middle of page.
0221 MT Hard Times.pdf: pictures and tables fuzzy; needs clean rescan.
0223 MT Assignment Vigilante.pdf: pp. 1-2, 7, 9, 14-16 need clean rescan.
0224 MT Astrogator's Guide to Diaspora.pdf: pp. 8-9 are upside down; p. 4-16 need clean rescan. Color sector map needs higher resolution.
0225 MT Arrival Vengeance.pdf: many misordered pages; all tables need clean rescan.
0000 MT Imperiallines1-2.pdf: IL #1 p. 4 needs clean rescan, IL #2 p. 6 needs to be rotated.